From MS
You can't copy the message tracking logs from an Exchange server and then use the Get-MessageTrackingLog cmdlet or the Message Tracking tool to search the copied logs on a different Exchange server. Also, if you save an existing message tracking log, the change in the date-time stamp of the message tracking log file breaks the query logic that is used to search the message tracking logs.
See here to get round it (you do need to stop the services)
http://msexchangeteam.com/archive/2008/10/22/450009.aspx